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ASM289129v1

Organism name:
Streptomyces eurocidicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 27428
BioSample:
SAMN03941210
BioProject:
PRJNA291301
Submitter:
Oak Ridge National Laboratory
Date:
2018/01/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002891295.1 (latest)
RefSeq assembly accession:
GCF_002891295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGUI01
Assembly method:
SPAdes v. 3.0; SMRT Analysis v. 2.3.0; CISA v. 1.3
Expected final version:
yes
Genome coverage:
220.0x
Sequencing technology:
Illumina MiSeq; PacBio

IDs: 1528621 [UID] 5903578 [GenBank] 5920108 [RefSeq]

See Genome Information for Streptomyces eurocidicus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/29/2015 12:57:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::6,641
CDS::5,993
Pseudo Genes::528
CRISPR Arrays::1
rRNAs::9 (5S, 16S, 23S)
tRNAs::72
ncRNA::39
Frameshifted Genes::115
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,931,574
Total ungapped length7,931,574
Number of contigs18
Contig N50801,731
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,931,574187,931,574801,73100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces eurocidicusStreptomyces eurocidicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_015475845.1Streptomyces eurocidicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015475845.1Streptomyces eurocidicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.4999.81
Best-match type99.9999.4999.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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