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ASM283416v1

Organism name:
Ruminococcus bromii (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: L2-36
BioSample:
SAMN07253121
BioProject:
PRJNA390910
Submitter:
University of Aberdeen
Date:
2017/12/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002834165.1 (latest)
RefSeq assembly accession:
GCF_002834165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NPHY01
Assembly method:
ABySS v. 1.9.0
Expected final version:
yes
Genome coverage:
75.0x
Sequencing technology:
Illumina HiSeq

IDs: 1487391 [UID] 5771088 [GenBank] 5784798 [RefSeq]

See Genome Information for Ruminococcus bromii

There are 61 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,276,073
Total ungapped length2,276,073
Number of contigs28
Contig N50144,375
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,276,073282,276,073144,37500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus bromiiRuminococcus bromii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002834225.1Ruminococcus bromiisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002834225.1Ruminococcus bromiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.7673.9878.26
Best-match type94.7673.9878.26

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna
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