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ASM283267v1

Organism name:
Streptomyces sp. S063 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: S063
BioSample:
SAMN07178425
BioProject:
PRJNA388536
Submitter:
Dalian University of Technology
Date:
2017/12/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002832675.1 (latest)
RefSeq assembly accession:
GCF_002832675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.4
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
PacBio

IDs: 1470221 [UID] 5736618 [GenBank] 8360888 [RefSeq]

See Genome Information for Streptomyces sp. S063

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Xinqing Zhao, Life Science and Biotechnology, Shanghai Jiaotong University.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2024 04:19:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,905
CDSs (total)::6,817
Genes (coding)::6,244
CDSs (with protein)::6,244
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::574
CDSs (without protein)::573
Pseudo Genes (ambiguous residues)::0 of 574
Pseudo Genes (frameshifted)::432 of 574
Pseudo Genes (incomplete)::192 of 574
Pseudo Genes (internal stop)::13 of 574
Pseudo Genes (multiple problems)::61 of 574
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,614,683
Total ungapped length7,614,683
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002832685.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP021707.1=NZ_CP021707.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,614,683

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. S063Streptomyces sp. S063

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649415.1Streptomyces badiustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.4491.3092.88

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna