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ASM280319v1

Organism name:
Streptomyces sp. CB02120-2 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CB02120-2
BioSample:
SAMN07346484
BioProject:
PRJNA393980
Submitter:
The scripps research institute
Date:
2017/12/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002803195.1 (latest)
RefSeq assembly accession:
GCF_002803195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NNBM01
Assembly method:
CLC NGS Cell v. 7.5.1
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina MiSeq

IDs: 1455391 [UID] 5691798 [GenBank] 5704178 [RefSeq]

See Genome Information for Streptomyces sp. CB02120-2

History (Show revision history)

Comment

Bacteria and source DNA available from The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/19/2017 14:56:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,538
CDS (total)::7,453
Genes (coding)::7,188
CDS (coding)::7,188
Genes (RNA)::85
rRNAs::7, 1, 1 (5S, 16S, 23S)
complete rRNAs::6, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::73
ncRNAs::3
Pseudo Genes (total)::265
Pseudo Genes (ambiguous residues)::4 of 265
Pseudo Genes (frameshifted)::104 of 265
Pseudo Genes (incomplete)::192 of 265
Pseudo Genes (internal stop)::31 of 265
Pseudo Genes (multiple problems)::59 of 265
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,451,160
Total ungapped length8,449,986
Gaps between scaffolds0
Number of scaffolds34
Scaffold N50476,343
Scaffold L507
Number of contigs51
Contig N50317,535
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,451,160348,449,986476,343170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CB02120-2Streptomyces sp. CB02120-2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650555.1Streptomyces goshikiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0689.0689.78

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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