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Source database (GenBank or RefSeq) File type

ASM280317v1

Organism name:: Streptomyces sp. CB02613 (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: CB02613
BioSample:: SAMN07346485
BioProject:: PRJNA393980
Submitter:: The scripps research institute
Date:: 2017/12/01
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_002803175.1 (latest)
RefSeq assembly accession:: GCF_002803175.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: NNBN01
Assembly method:: CLC NGS Cell v. 7.5.1
Expected final version:: yes
Genome coverage:: 150.0x
Sequencing technology:: Illumina MiSeq

IDs: 1455381 [UID] 5691778 [GenBank] 5704018 [RefSeq]

See Genome Information for Streptomyces sp. CB02613

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002803175.1	=	GCF_002803175.1	ASM280317v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::07/19/2017 14:23:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,525
CDS (total)::6,454
Genes (coding)::6,274
CDS (coding)::6,274
Genes (RNA)::71
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::64
ncRNAs::3
Pseudo Genes (total)::180
Pseudo Genes (ambiguous residues)::4 of 180
Pseudo Genes (frameshifted)::74 of 180
Pseudo Genes (incomplete)::129 of 180
Pseudo Genes (internal stop)::16 of 180
Pseudo Genes (multiple problems)::38 of 180
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	7,380,634
Total ungapped length	7,379,196
Gaps between scaffolds	0
Number of scaffolds	28
Scaffold N50	510,907
Scaffold L50	5
Number of contigs	41
Contig N50	413,006
Contig L50	7
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	28

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	98.13	84.46	78.05

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ASM280317v1

See Genome Information for Streptomyces sp. CB02613

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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