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ASM280315v1

Organism name:
Streptomyces sp. CB02959 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CB02959
BioSample:
SAMN07346487
BioProject:
PRJNA393980
Submitter:
The scripps research institute
Date:
2017/12/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002803155.1 (latest)
RefSeq assembly accession:
GCF_002803155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NNBP01
Assembly method:
CLC NGS Cell v. 7.5.1
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina MiSeq

IDs: 1455371 [UID] 5691758 [GenBank] 5716118 [RefSeq]

See Genome Information for Streptomyces sp. CB02959

History (Show revision history)

Comment

Bacteria and source DNA available from The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/19/2017 16:33:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::9,265
CDS (total)::9,187
Genes (coding)::8,648
CDS (coding)::8,648
Genes (RNA)::78
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::71
ncRNAs::3
Pseudo Genes (total)::539
Pseudo Genes (ambiguous residues)::3 of 539
Pseudo Genes (frameshifted)::179 of 539
Pseudo Genes (incomplete)::407 of 539
Pseudo Genes (internal stop)::44 of 539
Pseudo Genes (multiple problems)::87 of 539
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,358,718
Total ungapped length10,357,533
Gaps between scaffolds0
Number of scaffolds81
Scaffold N50249,698
Scaffold L5014
Number of contigs90
Contig N50228,424
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,358,7188110,357,533249,69890

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CB02959Streptomyces sp. CB02959

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650635.1Streptomyces albulussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.9460.2160.74

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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