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Source database (GenBank or RefSeq) File type

ASM280306v1

Organism name:: Streptomyces sp. CB01635 (high G+C Gram-positive bacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: CB01635
BioSample:: SAMN07346483
BioProject:: PRJNA393980
Submitter:: The scripps research institute
Date:: 2017/12/01
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_002803065.1 (latest)
RefSeq assembly accession:: GCF_002803065.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: NNBL01
Assembly method:: CLC NGS Cell v. 7.5.1
Expected final version:: yes
Genome coverage:: 150.0x
Sequencing technology:: Illumina MiSeq

IDs: 1455321 [UID] 5691688 [GenBank] 5704238 [RefSeq]

See Genome Information for Streptomyces sp. CB01635

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002803065.1	=	GCF_002803065.1	ASM280306v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from The Scripps Research Institute, 130 Scripps Way, Jupiter, FL 33458.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::07/19/2017 14:55:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::9,124
CDS (total)::9,050
Genes (coding)::8,522
CDS (coding)::8,522
Genes (RNA)::74
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::528
Pseudo Genes (ambiguous residues)::6 of 528
Pseudo Genes (frameshifted)::255 of 528
Pseudo Genes (incomplete)::371 of 528
Pseudo Genes (internal stop)::68 of 528
Pseudo Genes (multiple problems)::159 of 528
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	10,064,235
Total ungapped length	10,063,271
Gaps between scaffolds	0
Number of scaffolds	61
Scaffold N50	268,770
Scaffold L50	8
Number of contigs	74
Contig N50	258,392
Contig L50	10
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	61

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.99	31.12	35.83

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ASM280306v1

See Genome Information for Streptomyces sp. CB01635

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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