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ASM270569v1

Organism name:
Streptomyces sp. OspMP-M45 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OspMP-M45
BioSample:
SAMN02746034
BioProject:
PRJNA163005
Submitter:
DOE Joint Genome Institute
Date:
2017/10/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002705695.1 (latest)
RefSeq assembly accession:
GCF_002705695.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LACQ01
Assembly method:
ALLPATHS v. R37654
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 1406291 [UID] 5560198 [GenBank] 5591458 [RefSeq]

See Genome Information for Streptomyces sp. OspMP-M45

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 405346
Source DNA and Organism available from Cameron Currie (currie@bact.wisc.edu)
Source DNA available from Cameron Currie (currie@bact.wisc.edu)
Organism available from Cameron Currie (currie@bact.wisc.edu)
Contacts: Cameron Currie (currie@bact.wisc.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::ALLPATHS v. R37654
investigation_type::bacteria_archaea
project_name::Streptomyces sp. OspMP-M45
sequencing_meth::WGS
GOLD Stamp ID::Gp0012947
Funding Program::DOE-GLBRC 2011
Gene Calling Method::Prodigal 2.5
##MIGS-Data-END##

Global statistics

Total sequence length7,407,922
Total ungapped length7,407,822
Gaps between scaffolds0
Number of scaffolds53
Scaffold N50285,389
Scaffold L508
Number of contigs54
Contig N50285,389
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,407,922537,407,822285,38910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. OspMP-M45Streptomyces sp. OspMP-M45

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000721185.1Streptomyces griseolustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.2493.0491.44

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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