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ASM263339v1

Organism name:
Streptomyces sp. ScaeMP-e48 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ScaeMP-e48
BioSample:
SAMN05005154
BioProject:
PRJNA163017
Submitter:
DOE Joint Genome Institute
Date:
2017/10/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002633395.1 (latest)
RefSeq assembly accession:
GCF_002633395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AQTJ01
Assembly method:
ALLPATHS v. R37654
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 1369431 [UID] 5484708 [GenBank] 5553998 [RefSeq]

See Genome Information for Streptomyces sp. ScaeMP-e48

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 405342
Source DNA and Organism available from Cameron Currie (currie@bact.wisc.edu)
Source DNA available from Cameron Currie (currie@bact.wisc.edu)
Organism available from Cameron Currie (currie@bact.wisc.edu)
Contacts: Cameron Currie (currie@bact.wisc.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
alt_elev::Missing
assembly::ALLPATHS v. R37654
collection_date::Missing
country::Missing
depth::Missing
environment::Missing
investigation_type::bacteria_archaea
isol_growth_condt::Missing
lat_lon::Missing
project_name::Streptomyces sp. ScaeMP-e48
sequencing_meth::WGS
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
finishing_strategy::Missing
trophic_level::Missing
Funding Program::DOE-GLBRC 2011
##MIGS-Data-END##

Global statistics

Total sequence length8,325,244
Total ungapped length8,325,244
Number of contigs39
Contig N50458,130
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)39

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,325,244398,325,244458,13000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. ScaeMP-e48Streptomyces sp. ScaeMP-e48

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650075.1Streptomyces microflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.9590.4088.37

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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