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ASM259133v1

Organism name:: Streptomyces malaysiensis (high G+C Gram-positive bacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: DSM 4137
BioSample:: SAMN07427119
BioProject:: PRJNA396489
Submitter:: University of Cambridge
Date:: 2017/10/18
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_002591335.1 (latest)
RefSeq assembly accession:: GCF_002591335.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: phredPhrap v. 2012-12-24
Expected final version:: yes
Genome coverage:: 100.0x
Sequencing technology:: Sanger; 454; Illumina HiSeq; Illumina MiSeq

IDs: 1348341 [UID] 5411008 [GenBank] 5480908 [RefSeq]

See Genome Information for Streptomyces malaysiensis

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002591335.1	=	GCF_002591335.1	ASM259133v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from DSM 4137 (PFL_A197).

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::06/19/2022 09:50:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,664
CDSs (total)::8,579
Genes (coding)::8,316
CDSs (with protein)::8,316
Genes (RNA)::85
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::64
ncRNAs::3
Pseudo Genes (total)::263
CDSs (without protein)::263
Pseudo Genes (ambiguous residues)::0 of 263
Pseudo Genes (frameshifted)::63 of 263
Pseudo Genes (incomplete)::235 of 263
Pseudo Genes (internal stop)::17 of 263
Pseudo Genes (multiple problems)::46 of 263
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	10,744,231
Total ungapped length	10,744,231
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP023992.1	=	NZ_CP023992.1
Plasmid unnamed	CP023993.1	=	NZ_CP023993.1

Molecule	Total Length
All	10,744,231
Chromosome	10,694,678
Plasmid unnamed	49,553

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	98.62	93.72	86.52

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ASM259133v1

See Genome Information for Streptomyces malaysiensis

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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