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ASM255654v1

Organism name:
Streptomyces formicae (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: KY5
BioSample:
SAMN07444202
BioProject:
PRJNA396953
Submitter:
University of East Anglia
Date:
2017/10/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002556545.1 (latest)
RefSeq assembly accession:
GCF_002556545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.0; Newbler v. 2.3
Expected final version:
yes
Genome coverage:
56.0x
Sequencing technology:
PacBio; 454; Illumina MiSeq

IDs: 1331041 [UID] 5364728 [GenBank] 5416548 [RefSeq]

See Genome Information for Streptomyces formicae

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Matthew Hutchings, University of East Anglia, UK.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/08/2022 01:40:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,273
CDSs (total)::8,184
Genes (coding)::8,056
CDSs (with protein)::8,056
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::128
CDSs (without protein)::128
Pseudo Genes (ambiguous residues)::0 of 128
Pseudo Genes (frameshifted)::46 of 128
Pseudo Genes (incomplete)::97 of 128
Pseudo Genes (internal stop)::12 of 128
Pseudo Genes (multiple problems)::24 of 128
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,611,874
Total ungapped length9,611,874
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002556555.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP022685.1=NZ_CP022685.1

Assembly statistics

MoleculeTotal
Length
Chromosome 9,611,874

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces formicaeStreptomyces formicae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022647665.1Streptomyces formicaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001418465.1Streptomyces kanamyceticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.0321.7825.51
Best-match type93.7380.2278.83

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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