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Vdes_3.0

Organism name:
Varroa destructor (honeybee mite)
BioSample:
SAMD00093521
BioProject:
PRJDB6279
Submitter:
Ecology and Evolution Lab, Mikheyev Unit, Okinawa Institute of Science and Technology
Date:
2017/09/27
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002443255.1 (latest)
RefSeq assembly accession:
GCF_002443255.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
BEIS01
Assembly method:
Newbler v. 2.6; pbjelly v. 15.8.24
Genome coverage:
119x
Sequencing technology:
PacBio RSII; Illumina Sequencing

IDs: 1270761 [UID] 5186808 [GenBank] 5208468 [RefSeq]

See Genome Information for Varroa destructor

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length368,942,295
Total ungapped length368,670,960
Gaps between scaffolds0
Number of scaffolds1,426
Scaffold N5058,536,683
Scaffold L503
Number of contigs4,498
Contig N50201,886
Contig L50556
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1,426

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced368,925,8191,425368,654,48458,536,6833,0720
MoleculeTotal
Length
Mitochondrion MT16,476
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