U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM244182v1

Organism name:
Lactococcus cremoris subsp. tructae (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 21502
BioSample:
SAMN03267158
BioProject:
PRJNA270383
Submitter:
Inner Mongolia Agricultural University
Date:
2017/10/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002441825.1 (latest)
RefSeq assembly accession:
GCF_002441825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JXKC01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 1270031 [UID] 5184648 [GenBank] 5237088 [RefSeq]

See Genome Information for Lactococcus cremoris

There are 203 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,611,420
Total ungapped length2,611,344
Gaps between scaffolds0
Number of scaffolds61
Scaffold N50214,628
Scaffold L503
Number of contigs62
Contig N50214,628
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,611,420612,611,344214,62810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactococcus cremoris subsp. tructaeLactococcus cremoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001591705.1Lactococcus cremoris subsp. cremoris NBRC 100676suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001591705.1Lactococcus cremorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4175.5284.13
Best-match type98.4175.5284.13

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna