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ASM239338v1

Organism name:
Pasteurella multocida (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_384
BioSample:
SAMN07312428
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2017/09/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002393385.1 (latest)
RefSeq assembly accession:
GCF_002393385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera v. 8.2
Genome coverage:
1383.11x
Sequencing technology:
PacBio; Illumina

IDs: 1245191 [UID] 5130568 [GenBank] 5147118 [RefSeq]

See Genome Information for Pasteurella multocida

There are 1474 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/18/2023 02:39:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,239
CDSs (total)::2,158
Genes (coding)::2,143
CDSs (with protein)::2,143
Genes (RNA)::81
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::7 of 15
Pseudo Genes (incomplete)::9 of 15
Pseudo Genes (internal stop)::4 of 15
Pseudo Genes (multiple problems)::4 of 15
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,346,722
Total ungapped length2,346,722
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002393395.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP023516.1=NZ_CP023516.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,346,722

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pasteurella multocidaPasteurella multocida

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900454845.1Pasteurella multocida subsp. septicatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900454845.1Pasteurella multocidatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8991.1593.98
Best-match type98.8991.1593.98

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna