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WZ.A104

Organism name:
Streptomyces sp. WZ.A104 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: WZ.A104
BioSample:
SAMN07430084
BioProject:
PRJNA396590
Submitter:
Zhejiang Sci-Tech University
Date:
2017/09/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002382885.1 (latest)
RefSeq assembly accession:
GCF_002382885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NWVL01
Assembly method:
ABySS v. v1.5.2; SOAPdenovo v. v2.0.1
Expected final version:
no
Genome coverage:
96.0x
Sequencing technology:
Illumina HiSeq

IDs: 1239821 [UID] 5119568 [GenBank] 5140638 [RefSeq]

See Genome Information for Streptomyces sp. WZ.A104

History (Show revision history)

Comment

Bacteria and source DNA available from Bingnan Han.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/22/2017 14:08:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,415
CDS (total)::7,337
Genes (coding)::6,922
CDS (coding)::6,922
Genes (RNA)::78
rRNAs::1, 2, 3 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::2, 3 (16S, 23S)
tRNAs::67
ncRNAs::5
Pseudo Genes (total)::415
Pseudo Genes (ambiguous residues)::0 of 415
Pseudo Genes (frameshifted)::140 of 415
Pseudo Genes (incomplete)::331 of 415
Pseudo Genes (internal stop)::31 of 415
Pseudo Genes (multiple problems)::80 of 415
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,116,078
Total ungapped length8,116,078
Number of contigs189
Contig N5085,451
Contig L5031
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)189

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,116,0781898,116,07885,45100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. WZ.A104Streptomyces sp. WZ.A104

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650675.1Streptomyces anulatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.5162.5557.33

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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