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CMB-CS143

Organism name:
Streptomyces albidoflavus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 143
BioSample:
SAMN07505023
BioProject:
PRJNA398273
Submitter:
The University of Queensland
Date:
2017/09/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002317035.1 (latest)
RefSeq assembly accession:
GCF_002317035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NVPY01
Assembly method:
Velvet v. nov-15
Expected final version:
yes
Genome coverage:
115x
Sequencing technology:
Illumina MiSeq

IDs: 1205291 [UID] 5034168 [GenBank] 5070058 [RefSeq]

See Genome Information for Streptomyces albidoflavus

There are 57 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/15/2017 09:06:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,813
CDS (total)::6,729
Genes (coding)::5,735
CDS (coding)::5,735
Genes (RNA)::84
rRNAs::6, 3, 2 (5S, 16S, 23S)
complete rRNAs::5, 1 (5S, 23S)
partial rRNAs::1, 3, 1 (5S, 16S, 23S)
tRNAs::70
ncRNAs::3
Pseudo Genes (total)::994
Pseudo Genes (ambiguous residues)::0 of 994
Pseudo Genes (frameshifted)::241 of 994
Pseudo Genes (incomplete)::865 of 994
Pseudo Genes (internal stop)::38 of 994
Pseudo Genes (multiple problems)::141 of 994
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,029,244
Total ungapped length7,029,244
Number of contigs957
Contig N5012,358
Contig L50164
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)957

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,029,2449577,029,24412,35800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albidoflavusStreptomyces albidoflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004195735.1Streptomyces albidoflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004195735.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9183.8384.56
Best-match type97.9183.8384.56

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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