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ASM227624v1

Organism name:
Streptomyces sp. alain-838 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: alain-838
BioSample:
SAMN07488462
BioProject:
PRJNA397822
Submitter:
UAE University
Date:
2017/08/29
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002276245.1 (latest)
RefSeq assembly accession:
GCF_002276245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NQNW01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
yes
Genome coverage:
40.0x
Sequencing technology:
IonTorrent

IDs: 1184521 [UID] 4970968 [GenBank] 6371548 [RefSeq]

See Genome Information for Streptomyces sp. alain-838

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/15/2017 12:33:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,945
CDS (total)::7,861
Genes (coding)::6,333
CDS (coding)::6,333
Genes (RNA)::84
rRNAs::5, 1, 4 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 3 (5S, 23S)
tRNAs::71
ncRNAs::3
Pseudo Genes (total)::1,528
Pseudo Genes (ambiguous residues)::0 of 1,528
Pseudo Genes (frameshifted)::1,164 of 1,528
Pseudo Genes (incomplete)::467 of 1,528
Pseudo Genes (internal stop)::37 of 1,528
Pseudo Genes (multiple problems)::131 of 1,528
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,390,376
Total ungapped length8,390,376
Number of contigs581
Contig N5026,110
Contig L5096
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)581

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,390,3765818,390,37626,11000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. alain-838Streptomyces sp. alain-838

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649815.1Streptomyces mutabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.3673.0278.96

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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