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Source database (GenBank or RefSeq) File type

ARS-UCD1.2

This assembly has been replaced. See current version

Anomalous assembly.

Organism name:

Bos taurus (cattle)

Infraspecific name:

Breed: Hereford

Isolate:

L1 Dominette 01449 registration number 42190680

Sex:

female

BioSample:

SAMN03145444

BioProject:

PRJNA391427

Submitter:

USDA ARS

Date:

2018/04/11

Synonyms:

bosTau9

Assembly level:

Chromosome

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated

GenBank assembly accession:

GCA_002263795.2 (replaced)

RefSeq assembly accession:

GCF_002263795.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosome MT.
Different mitochondrial genome.

Data displayed for RefSeq version

WGS Project:

NKLS02

Assembly method:

Falcon v. FEB-2016

Expected final version:

yes

Genome coverage:

80.0x

Sequencing technology:

PacBio; Illumina NextSeq 500; Illumina HiSeq; Illumina GAII

IDs: 1677391 [UID] 6369068 [GenBank] 6386598 [RefSeq]

See Genome Information for Bos taurus

Pathogen Detection Resources

There are 11 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002263795.3	≠	GCF_002263795.2	ARS-UCD1.3	Chromosome	Latest GenBank, Latest RefSeq
GCA_002263795.2	≠	GCF_002263795.1	ARS-UCD1.2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_002263795.1	n/a	n/a	ARS-UCD1.1	Chromosome	GenBank suppressed

Comment

In May 2022 254 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	2,715,853,792
Total ungapped length	2,715,825,630
Gaps between scaffolds	0
Number of scaffolds	2,211
Scaffold N50	103,308,737
Scaffold L50	12
Number of contigs	2,597
Contig N50	25,896,116
Contig L50	32
Total number of chromosomes and plasmids	31
Number of component sequences (WGS or clone)	2,211

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM008168.2	=	NC_037328.1	0
Chromosome 2	CM008169.2	=	NC_037329.1	0
Chromosome 3	CM008170.2	=	NC_037330.1	0
Chromosome 4	CM008171.2	=	NC_037331.1	0
Chromosome 5	CM008172.2	=	NC_037332.1	0
Chromosome 6	CM008173.2	=	NC_037333.1	0
Chromosome 7	CM008174.2	=	NC_037334.1	0
Chromosome 8	CM008175.2	=	NC_037335.1	0
Chromosome 9	CM008176.2	=	NC_037336.1	0
Chromosome 10	CM008177.2	=	NC_037337.1	0
Chromosome 11	CM008178.2	=	NC_037338.1	0
Chromosome 12	CM008179.2	=	NC_037339.1	0
Chromosome 13	CM008180.2	=	NC_037340.1	0
Chromosome 14	CM008181.2	=	NC_037341.1	0
Chromosome 15	CM008182.2	=	NC_037342.1	0
Chromosome 16	CM008183.2	=	NC_037343.1	0
Chromosome 17	CM008184.2	=	NC_037344.1	0
Chromosome 18	CM008185.2	=	NC_037345.1	0
Chromosome 19	CM008186.2	=	NC_037346.1	0
Chromosome 20	CM008187.2	=	NC_037347.1	0
Chromosome 21	CM008188.2	=	NC_037348.1	0
Chromosome 22	CM008189.2	=	NC_037349.1	0
Chromosome 23	CM008190.2	=	NC_037350.1	0
Chromosome 24	CM008191.2	=	NC_037351.1	0
Chromosome 25	CM008192.2	=	NC_037352.1	0
Chromosome 26	CM008193.2	=	NC_037353.1	0
Chromosome 27	CM008194.2	=	NC_037354.1	0
Chromosome 28	CM008195.2	=	NC_037355.1	0
Chromosome 29	CM008196.2	=	NC_037356.1	0
Chromosome X	CM008197.2	=	NC_037357.1	0
unplaced	n/a	n/a	n/a	2,180

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,715,837,454	2,210	2,715,809,292	103,308,737	386
Chromosome 1	158,534,110	1	158,532,931	158,534,110	17
Chromosome 2	136,231,102	1	136,230,902	136,231,102	5
Chromosome 3	121,005,158	1	121,004,154	121,005,158	13
Chromosome 4	120,000,601	1	119,999,649	120,000,601	8
Chromosome 5	120,089,316	1	120,089,041	120,089,316	5
Chromosome 6	117,806,340	1	117,805,915	117,806,340	11
Chromosome 7	110,682,743	1	110,681,956	110,682,743	11
Chromosome 8	113,319,770	1	113,318,114	113,319,770	18
Chromosome 9	105,454,467	1	105,454,017	105,454,467	12
Chromosome 10	103,308,737	1	103,307,685	103,308,737	15
Chromosome 11	106,982,474	1	106,982,174	106,982,474	6
Chromosome 12	87,216,183	1	87,214,852	87,216,183	14
Chromosome 13	83,472,345	1	83,471,239	83,472,345	8
Chromosome 14	82,403,003	1	82,402,501	82,403,003	8
Chromosome 15	85,007,780	1	85,006,751	85,007,780	14
Chromosome 16	81,013,979	1	81,013,555	81,013,979	11
Chromosome 17	73,167,244	1	73,165,788	73,167,244	19
Chromosome 18	65,820,629	1	65,820,279	65,820,629	8
Chromosome 19	63,449,741	1	63,449,566	63,449,741	4
Chromosome 20	71,974,595	1	71,974,420	71,974,595	4
Chromosome 21	69,862,954	1	69,862,527	69,862,954	8
Chromosome 22	60,773,035	1	60,773,035	60,773,035	0
Chromosome 23	52,498,615	1	52,498,365	52,498,615	7
Chromosome 24	62,317,253	1	62,317,001	62,317,253	1
Chromosome 25	42,350,435	1	42,350,183	42,350,435	1
Chromosome 26	51,992,305	1	51,991,605	51,992,305	22
Chromosome 27	45,612,108	1	45,611,706	45,612,108	4
Chromosome 28	45,940,150	1	45,939,873	45,940,150	2
Chromosome 29	51,098,607	1	51,098,488	51,098,607	4
Chromosome X	139,009,144	1	139,002,941	139,009,144	55
unplaced	87,442,531	2,180	87,438,079	63,261	71

Assembly

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ARS-UCD1.2

See Genome Information for Bos taurus

Pathogen Detection Resources

There are 11 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear