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ASM222412v1

Organism name:
Streptomyces sp. NBS 14/10 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NBS 14/10
BioSample:
SAMN06288443
BioProject:
PRJNA362182
Submitter:
University of Sao Paulo
Date:
2017/07/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002224125.1 (latest)
RefSeq assembly accession:
GCF_002224125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NCSM01
Assembly method:
CLC NGS Cell v. 8
Expected final version:
no
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 1156241 [UID] 4833048 [GenBank] 4845798 [RefSeq]

See Genome Information for Streptomyces sp. NBS 14/10

History (Show revision history)

Comment

Bacteria and source DNA available from Welington Luiz de Araujo.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/11/2017 16:52:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::10,405
CDS (total)::10,333
Genes (coding)::9,601
CDS (coding)::9,601
Genes (RNA)::72
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::732
Pseudo Genes (ambiguous residues)::16 of 732
Pseudo Genes (frameshifted)::335 of 732
Pseudo Genes (incomplete)::493 of 732
Pseudo Genes (internal stop)::57 of 732
Pseudo Genes (multiple problems)::155 of 732
##Genome-Annotation-Data-END##

Global statistics

Total sequence length12,147,237
Total ungapped length12,138,933
Gaps between scaffolds0
Number of scaffolds127
Scaffold N50254,229
Scaffold L5011
Number of contigs211
Contig N50176,697
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)127

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced12,147,23712712,138,933254,229840

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. NBS 14/10Streptomyces sp. NBS 14/10

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002154605.1Streptomyces milbemycinicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.8072.6875.98

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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