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ASM221681v1

Organism name:
Candidatus Liberibacter asiaticus (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JXGC
BioSample:
SAMN06446703
BioProject:
PRJNA376787
Submitter:
Crop Diseases, Pests, Genetics Research Unit, San Joaquin Valley Agricultural Sciences Center
Date:
2017/07/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002216815.1 (latest)
RefSeq assembly accession:
GCF_002216815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v. 1.2.10; CLC genomic workbench 7.5*
Reference guided assembly:
CP010804.1
Genome coverage:
95x
Sequencing technology:
Illumina Hiseq

IDs: 1152061 [UID] 4679038 [GenBank] 4681058 [RefSeq]

See Genome Information for Candidatus Liberibacter asiaticus

Pathogen Detection Resources

There are 36 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/19/2020 02:57:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,098
CDSs (total)::1,042
Genes (coding)::1,019
CDSs (with protein)::1,019
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::23
CDSs (without protein)::23
Pseudo Genes (ambiguous residues)::0 of 23
Pseudo Genes (frameshifted)::19 of 23
Pseudo Genes (incomplete)::6 of 23
Pseudo Genes (internal stop)::8 of 23
Pseudo Genes (multiple problems)::8 of 23
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,225,162
Total ungapped length1,225,162
Total number of chromosomes and plasmids1

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002216825.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019958.1=NZ_CP019958.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,225,162
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