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AaegL5.0

Organism name:
Aedes aegypti (yellow fever mosquito)
Infraspecific name:
Strain: LVP_AGWG
Sex:
male
BioSample:
SAMN07177802
BioProject:
PRJNA318737
Submitter:
Aedes aegypti Genome Working Group (AGWG)
Date:
2017/06/22
Assembly type:
haploid-with-alt-loci
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002204515.1 (latest)
RefSeq assembly accession:
GCF_002204515.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 4224 unlocalized and unplaced scaffolds (in secondary assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
NIGP01
Assembly method:
Falcon_UNZIP v. 0.7.0
Expected final version:
yes
Genome coverage:
110.0x
Sequencing technology:
PacBio

IDs: 1141061 [UID] 4634188 [GenBank] 4674878 [RefSeq]

See Genome Information for Aedes aegypti

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Genome assembly generated by the Aedes aegypti Genome Working Group (AGWG). PacBio reads were assembled by FALCON-Unzip, scaffolded by Hi-C, and gap-filling and polishing performed by PBJ and arrow

Global statistics

Number of regions with alternate loci or patches3,818
Total sequence length1,278,715,314
Total assembly gap length22,935
Gaps between scaffolds0
Number of scaffolds2,309
Scaffold N50409,777,670
Scaffold L502
Number of contigs2,538
Contig N5011,758,062
Contig L5030
Total number of chromosomes and plasmids3
Number of component sequences (WGS or clone)2,309

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_002204525.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM008043.1=NC_035107.10
Chromosome 2CM008044.1=NC_035108.10
Chromosome 3CM008045.1=NC_035109.10
unplacedn/an/an/a2,306

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,278,715,3142,3091,278,692,379409,777,6702290
Chromosome 1310,827,0221310,820,022310,827,022700
Chromosome 2474,425,7161474,420,516474,425,716520
Chromosome 3409,777,6701409,772,535409,777,670510
unplaced83,684,9062,30683,679,30640,105560
MoleculeTotal
Length
Mitochondrion MT16,790
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