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ASM220157v1

Organism name:
Neomonachus schauinslandi (Hawaiian monk seal)
Sex:
male
BioSample:
SAMN06841387
BioProject:
PRJNA384558
Submitter:
Johns Hopkins University
Date:
2017/06/20
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002201575.1 (replaced)
RefSeq assembly accession:
GCF_002201575.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
NINY01
Assembly method:
RefAligner v. 5122; Supernova v. 1.1
Expected final version:
no
Genome coverage:
61.0x
Sequencing technology:
Illumina HiSeq

IDs: 1137021 [UID] 4616158 [GenBank] 4634138 [RefSeq]

See Genome Information for Neomonachus schauinslandi

History (Show revision history)

Comment

Global statistics

Total sequence length2,400,934,290
Total ungapped length2,347,217,317
Gaps between scaffolds0
Number of scaffolds7,873
Scaffold N5029,518,589
Scaffold L5027
Number of contigs46,708
Contig N50112,698
Contig L506,246
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)7,873

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_002201765.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome Xn/an/an/a22
unplacedn/an/an/a7,850

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,400,917,5367,8722,347,200,56329,518,58938,8350
Chromosome XAllAssembled moleculeUnlocalized scaffolds123,443,1380123,443,13822022117,042,8300117,042,83010,432,422010,432,4222,93702,937000
unplacedAssembled molecule2,277,474,3987,8502,230,157,73329,706,33035,8980
MoleculeTotal
Length
Mitochondrion MT16,754
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