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ASM219718v1

Organism name:
Thermococcus sp. 5-4 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:31817
Infraspecific name:
Strain: 5-4
BioSample:
SAMN07196561
BioProject:
PRJNA389376
Submitter:
Genoscope, Evry, France
Date:
2017/06/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002197185.1 (latest)
RefSeq assembly accession:
GCF_002197185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. Release 2.9
Expected final version:
yes
Genome coverage:
77.0x
Sequencing technology:
Illumina MiSeq

IDs: 1134481 [UID] 4607568 [GenBank] 4618498 [RefSeq]

See Genome Information for Thermococcus sp. 5-4

History (Show revision history)

Comment

Bacteria and source DNA available from Jacques Oberto.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002197185.1-RS_2024_05_07
Annotation Date::05/07/2024 02:51:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,029
CDSs (total)::1,977
Genes (coding)::1,976
CDSs (with protein)::1,976
Genes (RNA)::52
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::1
CDSs (without protein)::1
Pseudo Genes (ambiguous residues)::0 of 1
Pseudo Genes (frameshifted)::0 of 1
Pseudo Genes (incomplete)::1 of 1
Pseudo Genes (internal stop)::0 of 1
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,854,909
Total ungapped length1,854,909
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002197195.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP021848.1=NZ_CP021848.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,854,909

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermococcus sp. 5-4Thermococcus sp. 5-4

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002214565.1Thermococcus radiotoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.5788.3887.71

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna