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ASM219245v1

Organism name:
Streptomyces albireticuli (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MDJK11
BioSample:
SAMN06820531
BioProject:
PRJNA383953
Submitter:
Shandong Agricultural University
Date:
2017/06/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002192455.1 (latest)
RefSeq assembly accession:
GCF_002192455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 2.3
Expected final version:
yes
Genome coverage:
88.0x
Sequencing technology:
PacBio

IDs: 1132001 [UID] 4596518 [GenBank] 4601018 [RefSeq]

See Genome Information for Streptomyces albireticuli

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/16/2024 07:12:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,975
CDSs (total)::6,876
Genes (coding)::6,711
CDSs (with protein)::6,711
Genes (RNA)::99
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::75
ncRNAs::3
Pseudo Genes (total)::165
CDSs (without protein)::165
Pseudo Genes (ambiguous residues)::0 of 165
Pseudo Genes (frameshifted)::74 of 165
Pseudo Genes (incomplete)::97 of 165
Pseudo Genes (internal stop)::5 of 165
Pseudo Genes (multiple problems)::9 of 165
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,144,417
Total ungapped length8,144,417
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002192465.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP021744.1=NZ_CP021744.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,144,417

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albireticuliStreptomyces albireticuli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002286695.1Streptomyces albireticulitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002286695.1Streptomyces albireticulitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.1283.2880.23
Best-match type94.1283.2880.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna