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Source database (GenBank or RefSeq) File type

ASM218967v2

Organism name:: Streptomyces alboflavus (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: MDJK44
BioSample:: SAMN07173524
BioProject:: PRJNA388234
Submitter:: Shandong Agricultural University
Date:: 2017/10/18
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_002189675.2 (latest)
RefSeq assembly accession:: GCF_002189675.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Celera Assembler v. 2.3
Expected final version:: yes
Genome coverage:: 102.0x
Sequencing technology:: PacBio

IDs: 1446731 [UID] 5667118 [GenBank] 5677238 [RefSeq]

See Genome Information for Streptomyces alboflavus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002189675.2	=	GCF_002189675.2	ASM218967v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_002189675.1	=	GCF_002189675.1	ASM218967v1	Complete Genome	Replaced GenBank, Replaced RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/06/2023 10:30:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,849
CDSs (total)::8,759
Genes (coding)::7,993
CDSs (with protein)::7,993
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::766
CDSs (without protein)::766
Pseudo Genes (ambiguous residues)::0 of 766
Pseudo Genes (frameshifted)::583 of 766
Pseudo Genes (incomplete)::228 of 766
Pseudo Genes (internal stop)::23 of 766
Pseudo Genes (multiple problems)::66 of 766
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	9,967,549
Total ungapped length	9,967,549
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP021748.1	=	NZ_CP021748.1
Plasmid pMDJK44.1	CP023976.1	=	NZ_CP023976.1
Plasmid pMDJK44.2	CP023977.1	=	NZ_CP023977.1

Molecule	Total Length
All	9,967,549
Chromosome	9,622,415
Plasmid pMDJK44.1	256,434
Plasmid pMDJK44.2	88,700

	ANI	Query coverage	Subject coverage
Declared type	98.09	86.89	89.13
Best-match type	98.09	86.89	89.13

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ASM218967v2

See Genome Information for Streptomyces alboflavus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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