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ASM218836v1

Organism name:
Streptomyces sp. CS113 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CS113
BioSample:
SAMN06835261
BioProject:
PRJNA384375
Submitter:
Universidad de Oviedo
Date:
2017/06/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002188365.1 (latest)
RefSeq assembly accession:
GCF_002188365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NEVC01
Assembly method:
Newbler v. 2.9
Expected final version:
yes
Genome coverage:
78.17x
Sequencing technology:
Illumina MiSeq

IDs: 1129751 [UID] 4579828 [GenBank] 4589028 [RefSeq]

See Genome Information for Streptomyces sp. CS113

History (Show revision history)

Comment

Bacteria and source DNA available from Prof. Salas's laboratory, A. Microbiology, University of Oviedo, Spain.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/03/2017 16:23:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,890
CDS (total)::7,811
Genes (coding)::7,558
CDS (coding)::7,558
Genes (RNA)::79
rRNAs::2, 2, 7 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::2, 7 (16S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::253
Pseudo Genes (ambiguous residues)::0 of 253
Pseudo Genes (frameshifted)::124 of 253
Pseudo Genes (incomplete)::161 of 253
Pseudo Genes (internal stop)::24 of 253
Pseudo Genes (multiple problems)::52 of 253
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,728,089
Total ungapped length8,714,903
Gaps between scaffolds0
Number of scaffolds3
Scaffold N508,695,358
Scaffold L501
Number of contigs28
Contig N50823,625
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,728,08938,714,9038,695,358250

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CS113Streptomyces sp. CS113

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650435.1Streptomyces tendaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.3179.7278.18

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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