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ASM215589v1

Organism name:
Streptomyces rochei (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL B-2410
BioSample:
SAMN06291437
BioProject:
PRJNA293375
Submitter:
USDA/ARS/NCAUR
Date:
2017/05/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002155895.1 (latest)
RefSeq assembly accession:
GCF_002155895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MUMD01
Assembly method:
CLCbio Genomics Workbench v. 9.5.3
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina MiSeq

IDs: 1110631 [UID] 4497468 [GenBank] 4529558 [RefSeq]

See Genome Information for Streptomyces rochei

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from ARS Culture Collection, Peoria, IL USA.

Global statistics

Total sequence length7,682,401
Total ungapped length7,677,567
Gaps between scaffolds0
Number of scaffolds808
Scaffold N5020,398
Scaffold L50113
Number of contigs917
Contig N5020,398
Contig L50113
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)808

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,682,4018087,677,56720,3981090

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces rocheiStreptomyces rochei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650135.1Streptomyces plicatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.9392.6885.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchassembly is type-material
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