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ASM215576v1

Organism name:
Streptomyces caniscabiei (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-24093
BioSample:
SAMN06346051
BioProject:
PRJNA293375
Submitter:
USDA/ARS/NCAUR
Date:
2017/05/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002155765.1 (latest)
RefSeq assembly accession:
GCF_002155765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MVNW01
Assembly method:
CLC Genomics Workbench v. 9.5.3
Expected final version:
yes
Genome coverage:
80.0x
Sequencing technology:
Illumina MiSeq

IDs: 1110591 [UID] 4495398 [GenBank] 4528818 [RefSeq]

See Genome Information for Streptomyces caniscabiei

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from ARS Culture Collection, Peoria, IL.

Global statistics

Total sequence length9,879,526
Total ungapped length9,874,921
Gaps between scaffolds0
Number of scaffolds1,566
Scaffold N5011,589
Scaffold L50238
Number of contigs1,675
Contig N5011,541
Contig L50239
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,566

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,879,5261,5669,874,92111,5891090

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces caniscabieiStreptomyces caniscabiei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014930365.1Streptomyces caniscabieitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014930365.1Streptomyces caniscabieitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3188.2279.69
Best-match type98.3188.2279.69

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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