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ASM215460v1

Organism name:
Streptomyces milbemycinicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL 5739
BioSample:
SAMN06282496
BioProject:
PRJNA293375
Submitter:
USDA/ARS/NCAUR
Date:
2017/05/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002154605.1 (latest)
RefSeq assembly accession:
GCF_002154605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MUNE01
Assembly method:
CLCbio Genomics Workbench v. 9.5.3
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina MiSeq

IDs: 1110021 [UID] 4493388 [GenBank] 4529398 [RefSeq]

See Genome Information for Streptomyces milbemycinicus

History (Show revision history)

Comment

Bacteria and source DNA available from ARS Culture Collection, Peoria, IL USA.

Global statistics

Total sequence length11,617,640
Total ungapped length11,610,521
Gaps between scaffolds0
Number of scaffolds1,328
Scaffold N5017,761
Scaffold L50197
Number of contigs1,475
Contig N5017,642
Contig L50198
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,328

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced11,617,6401,32811,610,52117,7611470

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces milbemycinicusStreptomyces milbemycinicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001969965.1Streptomyces sparsogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.5350.0459.91

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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