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ASM215438v1

Organism name:
Streptomyces albovinaceus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-2566
BioSample:
SAMN06276569
BioProject:
PRJNA293375
Submitter:
USDA/ARS/NCAUR
Date:
2017/05/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002154385.1 (latest)
RefSeq assembly accession:
GCF_002154385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MUAX01
Assembly method:
CLC Genomics Workbench v. 9.5.3
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina MiSeq

IDs: 1109871 [UID] 4493128 [GenBank] 4527558 [RefSeq]

See Genome Information for Streptomyces albovinaceus

History (Show revision history)

Comment

Bacteria and source DNA available from ARS Culture Collection, Peoria, IL.

Global statistics

Total sequence length7,237,318
Total ungapped length7,234,208
Gaps between scaffolds0
Number of scaffolds594
Scaffold N5023,195
Scaffold L5096
Number of contigs667
Contig N5022,344
Contig L50100
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)594

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,237,3185947,234,20823,195730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albovinaceusStreptomyces albovinaceus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030077645.1Streptomyces pakaliitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.4180.6376.05

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected