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ASM215434v1

  • Anomalous assembly.
Organism name:
Streptomyces fimicarius (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL ISP-5322
BioSample:
SAMN06282270
BioProject:
PRJNA293375
Submitter:
USDA/ARS/NCAUR
Date:
2017/05/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
  • not used as type
GenBank assembly accession:
GCA_002154345.1 (latest)
RefSeq assembly accession:
GCF_002154345.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MUNB01
Assembly method:
CLCbio Genomics Workbench v. 9.5.3
Expected final version:
yes
Genome coverage:
75.0x
Sequencing technology:
Illumina MiSeq

IDs: 1109851 [UID] 4493108 [GenBank] 4528798 [RefSeq]

History (Show revision history)

Comment

Bacteria and source DNA available from ARS Culture Collection, Peoria, IL USA.

Global statistics

Total sequence length7,819,863
Total ungapped length7,815,696
Gaps between scaffolds0
Number of scaffolds846
Scaffold N5017,809
Scaffold L50132
Number of contigs939
Contig N5017,588
Contig L50133
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)846

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,819,8638467,815,69617,809930

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces fimicariusStreptomyces fimicarius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014655335.1Streptomyces griseussyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0795.0292.14

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type 'syntype' is not safe
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