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HanXRQr2.0-SUNRISE

Organism name:
Helianthus annuus (common sunflower)
Infraspecific name:
Cultivar: XRQ/B
BioSample:
SAMN05868438
BioProject:
PRJNA345532
Submitter:
International Consortium for Sunflower Genomics
Date:
2020/07/15
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002127325.2 (latest)
RefSeq assembly accession:
GCF_002127325.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosomes MT and Pltd.
  • Data displayed for RefSeq version
WGS Project:
MNCJ02
Assembly method:
CANU v. 1.3; CANU v. 1.4; FALCON v. 0.7; Bionano-Solve v. 3.2.1_04122018
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
PacBio RSII

IDs: 7358721 [UID] 20371458 [GenBank] 21526908 [RefSeq]

See Genome Information for Helianthus annuus

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,010,047,587
Total ungapped length2,948,144,550
Gaps between scaffolds0
Number of scaffolds334
Scaffold N50176,490,873
Scaffold L508
Number of contigs2,714
Contig N502,005,037
Contig L50448
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)334

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_002127335.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM007890.2=NC_035433.20
Chromosome 2CM007891.2=NC_035434.20
Chromosome 3CM007892.2=NC_035435.20
Chromosome 4CM007893.2=NC_035436.20
Chromosome 5CM007894.2=NC_035437.20
Chromosome 6CM007895.2=NC_035438.20
Chromosome 7CM007896.2=NC_035439.20
Chromosome 8CM007897.2=NC_035440.20
Chromosome 9CM007898.2=NC_035441.20
Chromosome 10CM007899.2=NC_035442.20
Chromosome 11CM007900.2=NC_035443.20
Chromosome 12CM007901.2=NC_035444.20
Chromosome 13CM007902.2=NC_035445.20
Chromosome 14CM007903.2=NC_035446.20
Chromosome 15CM007904.2=NC_035447.20
Chromosome 16CM007905.2=NC_035448.20
Chromosome 17CM007906.2=NC_035449.20
unplacedn/an/an/a315

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,009,595,5383322,947,692,501176,490,8732,3800
Chromosome 1149,502,1861146,781,638149,502,1861180
Chromosome 2174,800,4391171,931,713174,800,4391250
Chromosome 3176,490,8731172,278,191176,490,8731460
Chromosome 4208,320,1891204,287,366208,320,1891760
Chromosome 5178,169,6901174,547,813178,169,6901370
Chromosome 6148,147,3501144,767,033148,147,3501280
Chromosome 7149,542,0831145,616,893149,542,0831110
Chromosome 8167,167,9401163,820,636167,167,9401240
Chromosome 9189,665,0241185,494,824189,665,0241430
Chromosome 10181,411,5671178,006,829181,411,5671490
Chromosome 11189,830,4051186,652,990189,830,4051320
Chromosome 12163,781,2301160,781,186163,781,2301180
Chromosome 13173,487,2741169,441,160173,487,2741310
Chromosome 14173,346,9491169,004,771173,346,9491660
Chromosome 15175,671,3231172,609,528175,671,3231500
Chromosome 16206,736,6141202,517,681206,736,6141760
Chromosome 17195,042,4451190,689,596195,042,4451480
unplaced8,481,9573158,462,65340,96620
MoleculeTotal
Length
All452,049
Mitochondrion MT300,945
Chloroplast Pltd151,104
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