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ASM207817v1

Organism name:
Streptomyces sp. M41(2017) (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: M41
BioSample:
SAMN06311458
BioProject:
PRJNA371748
Submitter:
Harvard Medical School
Date:
2017/04/03
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002078175.1 (latest)
RefSeq assembly accession:
GCF_002078175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MWFK01
Assembly method:
HGAP v. 2.2
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio

IDs: 1061551 [UID] 4338148 [GenBank] 4340728 [RefSeq]

See Genome Information for Streptomyces sp. M41(2017)

History (Show revision history)

Comment

Bacteria and source DNA available from Cameron R. Currie.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/22/2017 19:11:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,054
CDS (total)::7,964
Genes (coding)::7,720
CDS (coding)::7,720
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
partial rRNAs::
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::244
Pseudo Genes (ambiguous residues)::0 of 244
Pseudo Genes (frameshifted)::62 of 244
Pseudo Genes (incomplete)::189 of 244
Pseudo Genes (internal stop)::14 of 244
Pseudo Genes (multiple problems)::20 of 244
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,023,708
Total ungapped length9,023,708
Number of contigs5
Contig N505,868,367
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,023,70859,023,7085,868,36700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. M41(2017)Streptomyces sp. M41(2017)

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002911015.1Streptomyces populitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.4256.1952.89

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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