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ASM202719v1

Organism name:
Streptomyces sp. GKU 895 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: GKU 895
BioSample:
SAMN06335520
BioProject:
PRJNA374788
Submitter:
Actinobacterial Research Unit, Department of Genetics, Faculty of Science, Kasetsart University
Date:
2017/03/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_002027195.1 (latest)
RefSeq assembly accession:
GCF_002027195.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MWJO01
Assembly method:
SPAdes v. 3.9
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
IonTorrent; Oxford Nanopore

IDs: 1024121 [UID] 4198628 [GenBank] 4202578 [RefSeq]

See Genome Information for Streptomyces sp. GKU 895

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/24/2017 14:51:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,714
CDS (total)::7,635
Genes (coding)::6,091
CDS (coding)::6,091
Genes (RNA)::79
rRNAs::6, 2, 3 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::3, 1, 3 (5S, 16S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::1,544
Pseudo Genes (ambiguous residues)::0 of 1,544
Pseudo Genes (frameshifted)::1,334 of 1,544
Pseudo Genes (incomplete)::277 of 1,544
Pseudo Genes (internal stop)::36 of 1,544
Pseudo Genes (multiple problems)::100 of 1,544
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,296,413
Total ungapped length8,296,413
Number of contigs190
Contig N5061,010
Contig L5040
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)190

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,296,4131908,296,41361,01000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. GKU 895Streptomyces sp. GKU 895

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001514065.1Streptomyces antibioticussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.9082.4567.50

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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