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ASM201783v1

Organism name:
Streptomyces avermitilis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MJM 7007
BioSample:
SAMN06209693
BioProject:
PRJNA361196
Submitter:
Korea University
Date:
2017/03/03
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002017835.1 (latest)
RefSeq assembly accession:
GCF_002017835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MTJO01
Assembly method:
PacBio SMRT Analysis v. 2.3
Expected final version:
no
Genome coverage:
70.0x
Sequencing technology:
PacBio

IDs: 1018801 [UID] 4173968 [GenBank] 4178568 [RefSeq]

See Genome Information for Streptomyces avermitilis

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/18/2017 16:11:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,386
CDS (total)::8,295
Genes (coding)::7,486
CDS (coding)::7,486
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
partial rRNAs::
tRNAs::70
ncRNAs::3
Pseudo Genes (total)::809
Pseudo Genes (ambiguous residues)::0 of 809
Pseudo Genes (frameshifted)::518 of 809
Pseudo Genes (incomplete)::351 of 809
Pseudo Genes (internal stop)::44 of 809
Pseudo Genes (multiple problems)::97 of 809
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,446,868
Total ungapped length9,446,868
Number of contigs79
Contig N50459,135
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)79

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,446,868799,446,868459,13500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces avermitilisStreptomyces avermitilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000764715.1Streptomyces avermitilis MA-4680 = NBRC 14893type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000764715.1Streptomyces avermitilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.6390.29
Best-match type99.9999.6390.29

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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