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ASM200917v1

Organism name:
Streptomyces niveus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SCSIO 3406
BioSample:
SAMN05370045
BioProject:
PRJNA328345
Submitter:
Dezhou university
Date:
2017/03/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002009175.1 (latest)
RefSeq assembly accession:
GCF_002009175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
denovo v. v2.04
Genome coverage:
315.48
Sequencing technology:
Illumina

IDs: 1014171 [UID] 4164348 [GenBank] 4167488 [RefSeq]

See Genome Information for Streptomyces niveus

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/13/2022 19:50:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,049
CDSs (total)::6,961
Genes (coding)::6,795
CDSs (with protein)::6,795
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::166
CDSs (without protein)::166
Pseudo Genes (ambiguous residues)::0 of 166
Pseudo Genes (frameshifted)::50 of 166
Pseudo Genes (incomplete)::133 of 166
Pseudo Genes (internal stop)::12 of 166
Pseudo Genes (multiple problems)::27 of 166
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,990,492
Total ungapped length7,990,492
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002009185.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP018047.1=NZ_CP018047.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,990,492

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces niveusStreptomyces niveus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001723055.1Streptomyces niveustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001723055.1Streptomyces niveustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type90.2269.8467.46
Best-match type90.2269.8467.46

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna
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