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ASM200744v3

Organism name:
Ailuropoda melanoleuca (giant panda)
Isolate:
Jingjing
Sex:
female
BioSample:
SAMN04193337
BioProject:
PRJNA588422
Submitter:
Institute of Zoology, Chinese Academy of Sciences
Date:
2020/04/20
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002007445.3 (latest)
RefSeq assembly accession:
GCF_002007445.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
LNAT02
Assembly method:
Scaff10X v. Sep-2017
Expected final version:
yes
Genome coverage:
93.0x
Sequencing technology:
Illumina; 10X Genomics; Flow-sorted chromosome sequencing

IDs: 12517911 [UID] 32756348 [GenBank] 32756368 [RefSeq]

See Genome Information for Ailuropoda melanoleuca

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

In April 2022 3774 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length2,440,277,323
Total ungapped length2,393,587,086
Gaps between scaffolds0
Number of scaffolds73,514
Scaffold N50129,245,720
Scaffold L508
Number of contigs122,820
Contig N50127,687
Contig L505,332
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)73,514

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_002007455.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM022819.1=NC_048218.10
Chromosome 2CM022820.1=NC_048219.10
Chromosome 3CM022821.1=NC_048220.10
Chromosome 4CM022822.1=NC_048221.10
Chromosome 5CM022823.1=NC_048222.10
Chromosome 6CM022824.1=NC_048223.10
Chromosome 7CM022825.1=NC_048224.10
Chromosome 8CM022826.1=NC_048225.10
Chromosome 9CM022827.1=NC_048226.10
Chromosome 10CM022828.1=NC_048227.10
Chromosome 11CM022829.1=NC_048228.10
Chromosome 12CM022830.1=NC_048229.10
Chromosome 13CM022831.1=NC_048230.10
Chromosome 14CM022832.1=NC_048231.10
Chromosome 15CM022833.1=NC_048232.10
Chromosome 16CM022834.1=NC_048233.10
Chromosome 17CM022835.1=NC_048234.10
Chromosome 18CM022836.1=NC_048235.10
Chromosome 19CM022837.1=NC_048236.10
Chromosome 20CM022838.1=NC_048237.10
Chromosome XCM022839.1=NC_048238.10
unplacedn/an/an/a73,492

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,440,260,51873,5132,393,570,281129,245,72049,3060
Chromosome 1212,770,9371209,365,606212,770,9373,0190
Chromosome 2199,809,8811196,878,387199,809,8812,8270
Chromosome 3147,627,9201145,876,855147,627,9202,1380
Chromosome 4144,794,2491142,102,192144,794,2492,2060
Chromosome 5130,990,9141129,345,555130,990,9141,7250
Chromosome 6131,587,3891129,509,294131,587,3892,1430
Chromosome 7141,533,0521138,988,642141,533,0522,0660
Chromosome 8129,245,7201127,273,673129,245,7202,0710
Chromosome 9103,688,5181101,927,606103,688,5181,6450
Chromosome 10110,580,3331108,928,816110,580,3331,7200
Chromosome 11110,513,2241108,310,362110,513,2241,7020
Chromosome 1281,781,225180,558,36181,781,2251,4250
Chromosome 1392,459,488190,906,39692,459,4881,6290
Chromosome 14106,650,3581104,775,843106,650,3581,5560
Chromosome 1591,612,352190,138,11291,612,3521,5200
Chromosome 1691,341,929189,938,14991,341,9291,4150
Chromosome 1742,246,006141,376,70542,246,0068580
Chromosome 1838,124,791137,466,74538,124,7916390
Chromosome 1935,683,536134,956,09335,683,5365980
Chromosome 2030,944,335130,411,33130,944,3356230
Chromosome X112,850,2211111,496,342112,850,2211,7730
unplaced153,424,14073,492143,039,2163,76914,0080
MoleculeTotal
Length
Mitochondrion MT16,805