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ASM200522v1

Organism name:
Streptomyces pactum (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ACT12
BioSample:
SAMN04002534
BioProject:
PRJNA374492
Submitter:
Northwest A&F Unversity
Date:
2017/02/21
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002005225.1 (latest)
RefSeq assembly accession:
GCF_002005225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 2.3.0
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
PacBio

IDs: 1009181 [UID] 4144398 [GenBank] 4197158 [RefSeq]

See Genome Information for Streptomyces pactum

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Northwest A&F Unversity.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/23/2023 04:49:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,319
CDSs (total)::7,225
Genes (coding)::6,985
CDSs (with protein)::6,985
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::73
ncRNAs::3
Pseudo Genes (total)::240
CDSs (without protein)::240
Pseudo Genes (ambiguous residues)::0 of 240
Pseudo Genes (frameshifted)::91 of 240
Pseudo Genes (incomplete)::202 of 240
Pseudo Genes (internal stop)::16 of 240
Pseudo Genes (multiple problems)::67 of 240
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,550,793
Total ungapped length8,550,793
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002005235.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019724.1=NZ_CP019724.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,550,793

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces pactumStreptomyces pactum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016031615.1Streptomyces pactumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001267885.1Streptomyces ambofacienstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type83.9713.9315.25
Best-match type90.7164.6965.90

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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