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ASM198444v1

Organism name:
Streptomyces lydicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: GS93
Isolate:
23
BioSample:
SAMN06251699
BioProject:
PRJNA363007
Submitter:
University of Minnesota
Date:
2017/02/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001984445.1 (latest)
RefSeq assembly accession:
GCF_001984445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PacBio v. Jan-2016
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
PacBio; Illumina MiSeq

IDs: 983401 [UID] 4054848 [GenBank] 4122858 [RefSeq]

See Genome Information for Streptomyces lydicus

There are 9 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Michael Smanski.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/13/2022 08:28:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,336
CDSs (total)::7,245
Genes (coding)::7,040
CDSs (with protein)::7,040
Genes (RNA)::91
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::205
CDSs (without protein)::205
Pseudo Genes (ambiguous residues)::0 of 205
Pseudo Genes (frameshifted)::60 of 205
Pseudo Genes (incomplete)::172 of 205
Pseudo Genes (internal stop)::10 of 205
Pseudo Genes (multiple problems)::32 of 205
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,243,179
Total ungapped length8,243,179
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001984455.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019457.1=NZ_CP019457.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,243,179

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces lydicusStreptomyces lydicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000717345.1Streptomyces lydicussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000717345.1Streptomyces lydicussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3496.1996.92
Best-match type99.3496.1996.92

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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