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ASM198397v1

Organism name:
Streptomyces autolyticus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CGMCC0516
BioSample:
SAMN06209296
BioProject:
PRJNA360354
Submitter:
school of medicine
Date:
2017/02/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001983975.1 (latest)
RefSeq assembly accession:
GCF_001983975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Analysis v. 2.3.0
Genome coverage:
279x
Sequencing technology:
Illumina; PacBio

IDs: 983161 [UID] 4054358 [GenBank] 4199908 [RefSeq]

See Genome Information for Streptomyces autolyticus

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/13/2022 19:48:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,251
CDSs (total)::8,165
Genes (coding)::7,884
CDSs (with protein)::7,884
Genes (RNA)::86
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::281
CDSs (without protein)::281
Pseudo Genes (ambiguous residues)::0 of 281
Pseudo Genes (frameshifted)::78 of 281
Pseudo Genes (incomplete)::242 of 281
Pseudo Genes (internal stop)::10 of 281
Pseudo Genes (multiple problems)::47 of 281
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,184,660
Total ungapped length10,184,660
Total number of chromosomes and plasmids8

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001983985.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019458.1=NZ_CP019458.1
Plasmid unnamed2CP019459.1=NZ_CP019459.1
Plasmid unnamed3CP019460.1=NZ_CP019460.1
Plasmid unnamed4CP019461.1=NZ_CP019461.1
Plasmid unnamed5CP019462.1=NZ_CP019462.1
Plasmid unnamed6CP019463.1=NZ_CP019463.1
Plasmid unnamed7CP019464.1=NZ_CP019464.1
Plasmid unnamed8CP019465.1=NZ_CP019465.1

Assembly statistics

MoleculeTotal
Length
All10,184,660
Chromosome 10,029,028
Plasmid unnamed246,799
Plasmid unnamed330,888
Plasmid unnamed415,583
Plasmid unnamed515,584
Plasmid unnamed615,586
Plasmid unnamed715,601
Plasmid unnamed815,591

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces autolyticusStreptomyces autolyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015689475.1Streptomyces solisilvaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7393.6781.96

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
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