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ASM194127v1

Organism name:
Streptomyces acidiscabies (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 98-48
BioSample:
SAMN05094139
BioProject:
PRJNA322217
Submitter:
University of Florida
Date:
2017/01/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001941275.1 (latest)
RefSeq assembly accession:
GCF_001941275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LYDS01
Assembly method:
SPAdes v. 3.5.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 946331 [UID] 3959268 [GenBank] 3970788 [RefSeq]

See Genome Information for Streptomyces acidiscabies

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length10,550,187
Total ungapped length10,550,187
Number of contigs983
Contig N5020,309
Contig L50150
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)983

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,550,18798310,550,18720,30900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces acidiscabiesStreptomyces acidiscabies

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014489635.1Streptomyces roseirectustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.7160.1763.81

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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