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ASM190590v1

Organism name:
Streptomyces sp. CB02366 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CB02366
BioSample:
SAMN03999384
BioProject:
PRJNA293172
Submitter:
The Scripps Research Institute
Date:
2016/12/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001905905.1 (latest)
RefSeq assembly accession:
GCF_001905905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LIVT01
Assembly method:
CLC Genomics Workbench v. 7.5.1
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina

IDs: 920661 [UID] 3799728 [GenBank] 3859118 [RefSeq]

See Genome Information for Streptomyces sp. CB02366

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/28/2015 09:52:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::6,356
CDS::6,029
Pseudo Genes::257
CRISPR Arrays::9
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::65
ncRNA::2
Frameshifted Genes::54
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,369,245
Total ungapped length7,368,673
Gaps between scaffolds0
Number of scaffolds44
Scaffold N50625,875
Scaffold L504
Number of contigs55
Contig N50540,869
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,369,245447,368,673625,875110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CB02366Streptomyces sp. CB02366

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000717645.1Streptomyces californicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.9675.2471.21

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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