U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM190564v1

Organism name:
Streptomyces sp. CB02115 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CB02115
BioSample:
SAMN03999388
BioProject:
PRJNA293172
Submitter:
The Scripps Research Institute
Date:
2016/12/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001905645.1 (latest)
RefSeq assembly accession:
GCF_001905645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LIVW01
Assembly method:
CLC Genomics Workbench v. 7.5.1
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina

IDs: 920531 [UID] 3799468 [GenBank] 3859038 [RefSeq]

See Genome Information for Streptomyces sp. CB02115

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/28/2015 10:00:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,526
CDS::7,268
Pseudo Genes::181
rRNAs::3, 1, 4 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::4 (23S)
tRNAs::68
ncRNA::1
Frameshifted Genes::41
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,690,341
Total ungapped length8,690,177
Gaps between scaffolds0
Number of scaffolds16
Scaffold N501,032,236
Scaffold L503
Number of contigs18
Contig N501,032,236
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)16

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,690,341168,690,1771,032,23620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CB02115Streptomyces sp. CB02115

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650675.1Streptomyces anulatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.8889.7688.08

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
Support Center