U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM190538v1

Organism name:
Streptomyces sp. CB02414 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CB02414
BioSample:
SAMN03999371
BioProject:
PRJNA293172
Submitter:
The Scripps Research Institute
Date:
2016/12/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001905385.1 (latest)
RefSeq assembly accession:
GCF_001905385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LIPF01
Assembly method:
CLC Genomics Workbench v. 7.5.1
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina

IDs: 920401 [UID] 3799208 [GenBank] 3858998 [RefSeq]

See Genome Information for Streptomyces sp. CB02414

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/20/2015 16:39:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,173
CDS::6,864
Pseudo Genes::237
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::67
ncRNA::1
Frameshifted Genes::57
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,987,504
Total ungapped length7,987,352
Gaps between scaffolds0
Number of scaffolds19
Scaffold N50615,730
Scaffold L505
Number of contigs21
Contig N50615,730
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)19

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,987,504197,987,352615,73020

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CB02414Streptomyces sp. CB02414

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649815.1Streptomyces mutabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.5970.1372.19

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
Support Center