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ASM190502v1

Organism name:
Streptomyces sp. CB03578 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CB03578
BioSample:
SAMN04857222
BioProject:
PRJNA293172
Submitter:
The Scripps Research Institute
Date:
2016/12/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001905025.1 (latest)
RefSeq assembly accession:
GCF_001905025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LWLD01
Assembly method:
CLC NGS Cell v. 8.5.1
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
Illumina MiSeq

IDs: 920241 [UID] 3798888 [GenBank] 3859218 [RefSeq]

See Genome Information for Streptomyces sp. CB03578

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/18/2016 15:43:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,358
CDS (total)::7,278
Genes (coding)::7,090
CDS (coding)::7,090
Genes (RNA)::80
rRNAs::3, 2, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::71
ncRNAs::3
Pseudo Genes (total)::188
Pseudo Genes (ambiguous residues)::3 of 188
Pseudo Genes (frameshifted)::46 of 188
Pseudo Genes (incomplete)::144 of 188
Pseudo Genes (internal stop)::15 of 188
Pseudo Genes (multiple problems)::18 of 188
CRISPR Arrays::8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,401,755
Total ungapped length8,401,237
Gaps between scaffolds0
Number of scaffolds42
Scaffold N50374,431
Scaffold L508
Number of contigs50
Contig N50374,431
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,401,755428,401,237374,43180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CB03578Streptomyces sp. CB03578

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650555.1Streptomyces goshikiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0591.5691.77

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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