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ASM190500v1

Organism name:
Streptomyces sp. CB02923 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CB02923
BioSample:
SAMN04853037
BioProject:
PRJNA293172
Submitter:
The Scripps Research Institute
Date:
2016/12/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001905005.1 (latest)
RefSeq assembly accession:
GCF_001905005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LWKZ01
Assembly method:
CLC NGS Cell v. 8.5.1
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
Illumina MiSeq

IDs: 920231 [UID] 3798868 [GenBank] 3859098 [RefSeq]

See Genome Information for Streptomyces sp. CB02923

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/18/2016 14:52:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,947
CDS (total)::7,869
Genes (coding)::7,549
CDS (coding)::7,549
Genes (RNA)::78
rRNAs::2, 1, 2 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::70
ncRNAs::3
Pseudo Genes (total)::320
Pseudo Genes (ambiguous residues)::6 of 320
Pseudo Genes (frameshifted)::39 of 320
Pseudo Genes (incomplete)::281 of 320
Pseudo Genes (internal stop)::15 of 320
Pseudo Genes (multiple problems)::20 of 320
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,573,831
Total ungapped length9,572,915
Gaps between scaffolds0
Number of scaffolds29
Scaffold N501,153,214
Scaffold L504
Number of contigs44
Contig N50721,891
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)29

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,573,831299,572,9151,153,214150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CB02923Streptomyces sp. CB02923

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000715845.1Streptomyces monomycinitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.5166.1970.49

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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