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ASM188659v1

Organism name:
Streptomyces venezuelae (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-65442
BioSample:
SAMN06014621
BioProject:
PRJNA353366
Submitter:
John Innes Centre
Date:
2016/11/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001886595.1 (latest)
RefSeq assembly accession:
GCF_001886595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP3 within SMRT Pipe v. 1.87.139483
Expected final version:
yes
Genome coverage:
155.0x
Sequencing technology:
PacBio

IDs: 894491 [UID] 3745118 [GenBank] 3765948 [RefSeq]

See Genome Information for Streptomyces venezuelae

There are 17 assemblies for this organism

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History (Show revision history)

Comment

Ends may not be complete (no terminal repeats or typical helicase-encoding gene)
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/28/2022 22:30:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,628
CDSs (total)::7,532
Genes (coding)::7,401
CDSs (with protein)::7,401
Genes (RNA)::96
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::132
CDSs (without protein)::131
Pseudo Genes (ambiguous residues)::0 of 132
Pseudo Genes (frameshifted)::32 of 132
Pseudo Genes (incomplete)::110 of 132
Pseudo Genes (internal stop)::7 of 132
Pseudo Genes (multiple problems)::16 of 132
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,380,320
Total ungapped length8,380,320
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001886605.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP018074.1=NZ_CP018074.1
Plasmid unnamedCP018075.1=NZ_CP018075.1

Assembly statistics

MoleculeTotal
Length
All8,380,320
Chromosome 8,222,198
Plasmid unnamed158,122

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces venezuelaeStreptomyces venezuelae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008639165.1Streptomyces venezuelae ATCC 10712type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008639165.1Streptomyces venezuelaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.0098.1199.98
Best-match type100.0098.1199.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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