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ASM188423v1

Organism name:
Bacillus paramycoides (firmicutes)
Infraspecific name:
Strain: NH24A2
BioSample:
SAMN05231634
BioProject:
PRJNA326288
Submitter:
The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources
Date:
2016/11/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001884235.1 (latest)
RefSeq assembly accession:
GCF_001884235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MAOI01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 893311 [UID] 3737778 [GenBank] 3740788 [RefSeq]

See Genome Information for Bacillus paramycoides

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Genome-Annotation-Data
##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/29/2016 11:35:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,459
CDS (total)::5,433
Genes (coding)::5,211
CDS (coding)::5,211
Genes (RNA)::26
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::18
ncRNAs::5
Pseudo Genes (total)::222
Pseudo Genes (ambiguous residues)::0 of 222
Pseudo Genes (frameshifted)::63 of 222
Pseudo Genes (incomplete)::155 of 222
Pseudo Genes (internal stop)::47 of 222
Pseudo Genes (multiple problems)::39 of 222
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,453,107
Total ungapped length5,453,107
Number of contigs144
Contig N50129,913
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)144

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,453,1071445,453,107129,91300
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