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ASM188413v1

Organism name:
Bacillus nitratireducens (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 4049
BioSample:
SAMN05231546
BioProject:
PRJNA326283
Submitter:
The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources
Date:
2016/11/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001884135.1 (latest)
RefSeq assembly accession:
GCF_001884135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MAOC01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 893241 [UID] 3737658 [GenBank] 3741268 [RefSeq]

See Genome Information for Bacillus nitratireducens

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/29/2016 12:00:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,552
CDS (total)::5,517
Genes (coding)::5,375
CDS (coding)::5,375
Genes (RNA)::35
rRNAs::2, 1 (16S, 23S)
complete rRNAs::1 (23S)
partial rRNAs::2 (16S)
tRNAs::27
ncRNAs::5
Pseudo Genes (total)::142
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::43 of 142
Pseudo Genes (incomplete)::83 of 142
Pseudo Genes (internal stop)::35 of 142
Pseudo Genes (multiple problems)::18 of 142
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,487,699
Total ungapped length5,487,699
Number of contigs101
Contig N50148,012
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)101

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,487,6991015,487,699148,01200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus nitratireducensBacillus nitratireducens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001884065.1Bacillus proteolyticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.8287.2981.75

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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