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ASM188410v1

Organism name:
Bacillus luti (firmicutes)
Infraspecific name:
Strain: TD41
BioSample:
SAMN05231662
BioProject:
PRJNA325892
Submitter:
The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources
Date:
2016/11/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001884105.1 (latest)
RefSeq assembly accession:
GCF_001884105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MACI01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 893231 [UID] 3737618 [GenBank] 3740288 [RefSeq]

See Genome Information for Bacillus luti

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Genome-Annotation-Data
##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/17/2016 16:23:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,257
CDS (total)::5,230
Genes (coding)::5,080
CDS (coding)::5,080
Genes (RNA)::27
rRNAs::2, 1, 2 (5S, 16S, 23S)
complete rRNAs::1 (16S)
partial rRNAs::2, 2 (5S, 23S)
tRNAs::17
ncRNAs::5
Pseudo Genes (total)::150
Pseudo Genes (ambiguous residues)::0 of 150
Pseudo Genes (frameshifted)::39 of 150
Pseudo Genes (incomplete)::98 of 150
Pseudo Genes (internal stop)::30 of 150
Pseudo Genes (multiple problems)::15 of 150
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,094,423
Total ungapped length5,094,423
Number of contigs99
Contig N50111,820
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)99

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,094,423995,094,423111,82000
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